PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2030_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 96aa    MW: 9987.08 Da    PI: 11.0286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2030_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056992123
                                        EEETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                        ++C+ C++sF +   L++H +  H
  cra_locus_2030_iso_7_len_633_ver_3 69 HTCKSCSRSFGSENALESHKKAkH 92
                                        79*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-56191No hitNo description
PfamPF139126.1E-76992IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.36996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTDLKKGGVH IATPHPSKQA GKTPGNKNQQ  60
TPKSGGGSHT CKSCSRSFGS ENALESHKKA KHSGGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612087.11e-41PREDICTED: histone deacetylase HDT1-like
RefseqXP_016469752.11e-41PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I63e-32HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A068V4672e-42A0A068V467_COFCA; Uncharacterized protein
STRINGSolyc10g085560.1.13e-40(Solanum lycopersicum)